install#
The easiest way to install abutils
locally (on macOS or Linux) is to use pip
:
$ pip install abutils
If you don’t have pip
, the Anaconda Python distribution contains pip
along
with a ton of useful scientific Python packages and is a great way to get
started with Python.
abutils
does not run natively on Windows, but Windows users can use Docker
(the brineylab datascience Docker container contains the entire ab[x] toolkit,
which includes abutils
):
$ docker pull brineylab/datascience
$ docker run -it brineylab/datascience
Stable and development versions of abutils
can also be downloaded from Github.
You can manually install the latest version of abutils
with:
$ git clone https://github.com/briney/abutils
$ cd abutils/
$ python setup.py install
requirements#
additional dependencies#
Whenever possible, abutils
bundles required third-party binaries, but there are a few
additional non-python dependencies that must be separately installed. These tools are
not needed for installation, but are necessary for specific functions:
If using Docker, all of the the optional dependencies are included.